PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MA_164507g0010
Organism
Picea abies
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NF-YC
Protein Properties Length: 281aa    MW: 32864.6 Da    PI: 6.269
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MA_164507g0010genomeConGenIEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC167.91.2e-521072111102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql++fw++q   +e+ ++fk+h+lPlarikki+k+dedvkmisaeaPvl+skacelfileltlrswlh+eenkrrtl+++dia a++r d+ dfl
  MA_164507g0010 107 QLQMFWQQQmqeMEQIAEFKQHQLPLARIKKIMKSDEDVKMISAEAPVLFSKACELFILELTLRSWLHTEENKRRTLQRNDIAGAISRGDVLDFL 201
                     89*****99888999******************************************************************************** PP

           NF-YC  93 vdivprdelk 102
                     +divprde+k
  MA_164507g0010 202 LDIVPRDEVK 211
                     *******875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471137.71E-3195201IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.9E-36123192IPR009072Histone-fold
PfamPF008089.9E-21129192IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MGEGLPKSRE RSESRRLDME GHMEEIHTFR RSSTPEEIRG GQLCRSGTYV CTYSIVIGYK  60
ILFYCPLSVS FISEEEQQPQ MPMQHHQQQL QGSMQPHLHY MQIQKQQLQM FWQQQMQEME  120
QIAEFKQHQL PLARIKKIMK SDEDVKMISA EAPVLFSKAC ELFILELTLR SWLHTEENKR  180
RTLQRNDIAG AISRGDVLDF LLDIVPRDEV KDEEYGGHWP GIPHAESMSY GGIHFPLMHA  240
QPYHHNLNPD VMTAQQTMSQ QLMSQQPLMP DQQLMYQPPQ Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g92_C2e-4110820719119HapE
4g91_C2e-4110820719119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179185RRTLQRN
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0850830.0EF085083.1 Picea sitchensis clone WS0296_J03 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011622041.16e-73PREDICTED: uncharacterized protein LOC18430586
SwissprotQ9FMV54e-61NFYC4_ARATH; Nuclear transcription factor Y subunit C-4
TrEMBLA9NUT01e-149A9NUT0_PICSI; Putative uncharacterized protein
STRINGPP1S315_9V6.35e-76(Physcomitrella patens)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31517117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63470.21e-52nuclear factor Y, subunit C4